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Nanopore

Nanopore

by Jean P. Elbers Jean P. Elbers

This is a feed that looks for Oxford Nanopore Technologies (not affiliated) DNA, RNA, and/or Protein Sequencing related posts based on text with nanopore or oxford nanopore. Does not look for ont. // Made at BlueskyFeeds.com

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  • 📅 Updated over 1 year ago
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Sara Rouhanifard
@srouhanifard.bsky.social
12 minutes ago
1/🧵 🚨 New paper published in RNA! Scientists often say anecdotally that RNA modifications are disrupted in immortalized cells — but no one’s really tested it. So we did: ψ-mapping in primary T cells vs. Jurkat cells using direct RNA-seq. 📄 tinyurl.com/TCellPsiRNA #nanopore #RNA #pseudouridine
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NextSprints
@nextsprints.bsky.social
about 22 hours ago
Read more here: nextsprints.com/oxford-na…
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Kavli Institute for Nanoscience Discovery, University of Oxford
@kavlioxford.bsky.social
1 day ago
These are measured using mass photometry, nanopore sensing, and escape-time electrometry, respectively—all techniques originally pioneered at the Department of Chemistry at the University of Oxford.
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Javier Santoyo
@jsantoyo.bsky.social
2 days ago
Identifying DNA methylation types and methylated base positions from bacteria using nanopore sequencing with multi-scale neural network.#DNAmethylation #BacterialDNA #Nanopore #Sequencing #Genomics #Bioinformatics @nanoporetech.com academic.oup.com/bioinfor….
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Tominaga K. (tomiken)
@pacyc184.bsky.social
3 days ago
Identifying DNA methylation types and methylated base positions from bacteria using nanopore sequencing with multi-scale neural network | Bioinformatics | Oxford Academic academic.oup.com/bioinfor…
Identifying DNA methylation types and methylated base positions from bacteria using nanopore sequencing with multi-scale neural network

dx.doi.org

Identifying DNA methylation types and methylated base positions from bacteria using nanopore sequencing with multi-scale neural network

AbstractMotivation. DNA methylation plays important roles in various cellular physiological processes in bacteria. Nanopore sequencing has shown the abilit
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Gregor Diensthuber
@gdiensthuber.bsky.social
3 days ago
Huge thanks to all the incredible people @novoalab.bsky.social that helped make this work possible! #rnasky #nanopore
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Cancerpapers
@rahmah98.bsky.social
3 days ago
Machine-learning-assisted nanopore sensing solution for the determination of matrix metalloproteinase pubmed.ncbi.nlm.nih.gov/4…
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@plantgenomics.bsky.social
4 days ago
Systematic benchmarking of basecalling models for RNA modification detection with highly multiplexed nanopore sequencing doi.org/10.1101/2025...
Systematic benchmarking of basecalling models for RNA modification detection with highly multiplexed nanopore sequencing

doi.org

Systematic benchmarking of basecalling models for RNA modification detection with highly multiplexed nanopore sequencing

Nanopore direct RNA sequencing (DRS) holds promise for advancing our understanding of the epitranscriptome by detecting RNA modifications in native RNA molecules. Recently, Oxford Nanopore Technologie...
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AI x Bio Discovery
@aixbiobot.bsky.social
6 days ago
Systematic benchmarking of basecalling models for RNA modification detection with highly multiplexed nanopore sequencing [new] RNA seq basecaller eval: reliable detection, high FP, cross-reactivity.
Systematic benchmarking of basecalling models for RNA modification detection with highly multiplexed nanopore sequencing
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bioRxiv Bioinfo
@biorxiv-bioinfo.bsky.social
6 days ago
Systematic benchmarking of basecalling models for RNA modification detection with highly multiplexed nanopore sequencing www.biorxiv.org/content/1…
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bioRxivpreprint
@biorxivpreprint.bsky.social
6 days ago
Systematic benchmarking of basecalling models for RNA modification detection with highly multiplexed nanopore sequencing www.biorxiv.org/content/1…
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Franck Dumetz 🦠😻🏳️‍🌈
@franckdumetz.bsky.social
6 days ago
Join me at BUGSS on Sat August 9th for a approachable and interactive "lecture" on the theory of Nanopore Sequencing, discuss pros and cons, potential applications, answer your questions, and more. See you there! #ONTsequencing #CitizenScience @genomescience.bsky.social @nanoporetech.com
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AI x Bio Discovery
@aixbiobot.bsky.social
6 days ago
Campolina: A Deep Neural Framework for Accurate Segmentation of Nanopore Signals [new] Deep learning segments nanopore signals into events, outperforming algorithmic methods by better identifying event boundaries.
Campolina: A Deep Neural Framework for Accurate Segmentation of Nanopore Signals
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Daniel Kim
@profdanielkim.bsky.social
7 days ago
We leveraged the power of single-molecule, long-read sequencing of cell-free RNA using Oxford Nanopore Technologies' PromethION platform @nanoporetech.com to discover over 270,000 novel, intergenic cell-free RNAs.
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Daniel Kim
@profdanielkim.bsky.social
7 days ago
Super excited to share our latest work on RNA liquid biopsy via nanopore sequencing for novel biomarker discovery and cancer early detection! www.biorxiv.org/content/1….
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Stephen Turner
@stephenturner.us
7 days ago
NANOME: A Nextflow pipeline for haplotype-aware allele-specific consensus DNA methylation detection by nanopore long-read sequencing pubmed.ncbi.nlm.nih.gov/4… 🧬🖥️🧪 github.com/LabShengLi/n...
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